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SPUPNIC

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/* Change Log */
= SpUpNIC User Manual =
<!--<span style="color:red">'''NOTE: ''' There is a memory leak in the Quick-Look software, which causes the software's memory consumption to grow larger each time a new spectrum is loaded. We are working to fix this. In the meantime, the work-around is to restart the Quick-Look GUI at least daily, or more often if required. See instructions below for how to do this.</span>-->
*'' If you find this webpage already loaded in the browser, please refresh the page to ensure that it is current!''
We hope that you enjoy using SpUpNIC and that you will provide the instrument team with feedback and suggestions by emailing lisa_at_saao.ac.za.
== Change Log Recent Updates ==
*'''October 2023:''' The new autoguider that forms part of the instrument selector to accommodate both SpUpNIC and SHOC has been commissioned. There are slight changes to the operation of the autoguider, and <span style="color:red">observers now needs to connect to a new TCS PC (tcs74v4.suth) to use the telescope with SpUpNIC.</span>
*'''27 September 2017:''' SpUpNIC back in service after fixing a bad connection within the pre-amp electronics. On 8 September the detector began producing only zeros and after extensive trouble-shooting, the detector package was removed from the instrument (on 13 September) and sent down to Cape Town for further investigation and subsequent repair. A total of 12 scheduled nights were lost to this extremely serious failure (although the two observers affected worked with SHOC instead).
*'''3 August 2017:''' Completed extensive testing of various gratings (particularly G7) in order to characterise the ghosting issues reported previously.
*'''29 July 2017:''' Moved the SpUpNIC utility panel to improve the routing of the cables and air hose for the pneumatics to reduce the pointing restrictions in the south east. New software limits will soon be implemented to take advantage of the increased clearance between the spectrograph and the north pier.
*'''10 April 2017:''' G7 replaced with an almost identical new one that does not have fingerprints or scratches! The blaze of the new one is at 5000A, rather than 4600A, since the latter is no longer available from the manufacturer. The 5000A blaze is also a better match for the peak response of this CCD.
* '''30 March 2017:''' New functionality added to the GUI for the rear-of-slit (Lodestar) camera to allow background subtraction. There is now also a slider bar to adjust the brightness of the display, this works best with background subtraction applied.
* '''20-25 January 2017:''' Engineering run during which the cryostat was re-aligned to the rest of the instrument in an attempt to remove what was thought to be coma in the images. Eventually concluded that the faint tails extending redward of arc lines are an optical ghost - a series of reflections thought to arise as light bounces between the CCD and the field-flattener lens that forms the cryostat window. There is no simple fix for this so the effect will just have to be quantified.
* '''21 December 2016:''' Initial documentation for Quick-Look GUI added: https://topswiki.saao.ac.za/index.php/Quick_Look_Tool
* '''6-13 December 2016:''' Another intensive week of software refinement! Highlights include the introduction of: the ability to send target coordinates from the SpUpNIC target catalogue file to the TCS (both for pointing and for downloading finder charts), a new exposure tab for automatically running sequences of exposures (e.g. arc-object-arc procedures), a more streamlined Hartmann routine, as well as the general tidying up of various minor software issues. Also the start of comprehensive documentation of the SpUpNIC Control and Quick-Look GUIs.
* '''9 November 2016:''' Installed a new grating lock that restores full software control of the grating mechanism, while maintaining stability of the grating angle. The user can now change gratings and optimise the wavelength range by changing the grating angle via the SpUpNIC Control GUI (without having to call for technical support).
* '''5 August 2016:''' The cryostat lost vacuum and warmed up. We're not sure what caused this, but suspect that the cryostat valve had not been closed tightly enough and so the vacuum gradually degraded. Leak-testing revealed nothing so we pumped the cryostat over night and the observers were back on-sky a night later.
* '''30 July 2016:''' A new version of the Quick-Look GUI has been installed and seems to be working reliably, please report any issues to Lisa Crause (lisa_at_saao.ac.za) and David Gilbank (gilbank_at_saao.ac.za).
* '''28 July 2016:''' The SpUpNIC optics fogged up due to a massive condensation event in the 1.9-m dome. A temporary dry nitrogen purge was introduced into the instrument to drive out the moisture - fortunately no real harm was done.
* '''1 June 2016:''' Disabled the input field and ''Go'' button for changing the grating angle in the instrument control GUI (to accompany the hardware changes described below). Please contact the standby electronics technician if you wish to change either the grating angle or the grating.
* '''26 May 2016:''' A mechanical brake was installed on the grating mechanism to eliminate play in the system (this will be replaced with an electro-mechanical solution to be developed over the coming months).
* '''25 May 2016:''' The inner surfaces of the instrument covers were coated with resin to stop the generation of fine fibre-glass dust.
* '''5 May 2016:''' The optics in the lower box were cleaned to get rid of the fine dust that was being liberated by the instrument covers.
* '''16-23 December 2015:''' The SpUpNIC software evolved substantially during this week. The wiki has been adapted to reflect these and other subsequent changes.
== Quick Start ==
This is a basic overview of taking data; if you're unsure about anything, the Advanced User Guide section contains more information.
* Log into the SpUpNIC PC. If observing remotely, connect to spupnic.suth.saao.ac.za by VNC. Username & password available from support staff.
* If the instrument Control and Quick-Look interfaces are not running, they may be started from the panel on the left edge of the left screen. The SpUpNIC Control GUI is started with the absorption spectrum icon [[File:control_GUI.jpg|20px]], and the Quick-Look GUI from the emission spectrum icon [[File:quicklook_GUI.jpg|20px]].
* Ensure that the grating you require has been installed by a technician - '''observers must not handle the gratings''' (see the grating change instructions in the Start of Run Section), and then set the grating to the required angle.
* Check that the required filter is in the beam (or left open if required).
* Run a Hartmann routine (see the Advanced User Guide) to establish the best focus for the spectrograph.
* Set the The required spectrograph camera focusshould be set automatically after a Hartmann run - check that this is the case.
* Set the slit width.
* Select the exposure type (ARC, BIAS, SCIENCE, FLAT, TEST).
* If appropriate, set the exposure time and number of exposures.
* Load your target catalogue file.
* Select a target from the target catalogue file so that the object name and coordinates will go into the fits header, and can be read by the TCS.
* If taking a science image, acquire the target, and ensure that it is visible through the slit and in focus.
* If taking an arc, ensure that the arc mirror is in-beam, and the required arc lamp is on.
In the SpUpNIC Control GUI:
* At the start of your run, click on the ''Advanced'' tab. In the ''Observer Info'' box, enter your name and increment the run number by +1 from the number that was in there for the previous user. In the past, one would determine the run number by looking in the old triplicate observing log book, but with remote observing and electronic logs in use these days, the last logbook entry may not give the appropriate run number. But the The Quick-Look GUI now keeps a detailed electronic log based on fits header info, but issues have arisen with it mixing up exposures, so users are moving away from keeping a handwritten logadvised to keep their own logs (e. The last logbook entry thus may not give the appropriate run numberg. a spreadsheet).
====Setting up the grating====
* Once you have the correct grating in the spectrograph, enter an approximate starting angle (see the grating table above) in the ''Grating angle'' box and click ''Go''.
* Take an arc and check the wavelength range on the Quick-Look extraction that will appear shortly after the image is read out. Note that it is advisable to double check the arc by displaying the spectrum in e.g. pyRAF, as the Quick-Look plot doesn't always display the arc lines at the end of the wavelength range.
* If the spectrum is too blue (red), decrease (increase) the grating angle and repeat the arc to check the new wavelength range - iterate until happy with the range.
* The software now decides, based on which grating is in use, which lamp to switch on once ARC is selected from the ''Exposure type'' drop-down list on the ''Exposure/CCD info'' pane.
* Alternatively, click on the appropriate lamp icon in the instrument schematic - this , where 1=CuNe and 2=CuAr. This will switch on the lamp and insert the arc mirror into the beam. Having taken the arc, simply click on the arc mirror icon in the schematic to remove the arc mirror and switch the lamp off. One can also control the lamps using the ''Lamp/Mirror Settings'' pane of the SpUpNIC Control GUI. Click the appropriate ''Change'' state button to switch the desired lamp on/off, and to move the arc mirror into the beam to take an arc exposure.
===Daily Daytime Tasks===
The spectrograph camera does not have a shutter, so even though bias frames are zero second exposures, you still need to take them when no light can reach the detector. Ideally while the mirror cover is still closed, or at least not while pointing to an object, or while an arc lamp or the slit illumination etc is on. The bias level on SpUpNIC is stable, but these frames take next-to-no time, so just snap a bunch of them (say 25?) every day.
====Dome Flatsflat recipe====
[[File:dome_flats.jpg|thumbnail]]
Dome flats give a measure of the pixel-to-pixel sensitivity variations over the CCD. The dome's white flat-field screen is not perfectly evenly illuminated by the lamps on the top end of the telescope, but the light goes through the slit, gets collimated, diffracted and re-focussed, so that is not a problem. We do not use the sky for this as you would get spectra of the Sun! '''Configuring the telescope, dome and lamps for flats is now done entirely from the TCS:'''
# First check the observing floor for ladders or obstructions. If you're observing remotely you can use the webcam, or if you're in the dome just pop upstairs.# On the TCS, click the grey "FLOOR" button near the top to change the telescope control to "TCS".# Click the red "Telescope Power is OFF" button on the top left. Telescope power will switch on, the button will turn green, and the various subsystem statuses will be populated.# Click the red "Man" button on the top right to switch the dome to auto. # Click "CLEAR", then "DOME" and select "Mirror open" from the drop down menu.# Click "CLEAR" then "TARGET" and a range of buttons will appear. Click on the "Dome Flat" button toward the right. This will slew the telescope to point to a panel on the ceiling, painted white. Once the telescope has stopped moving, the dome will switch to manual. # Above the date and time info, click the yellow "Flat Lamp OFF" button. It will turn red and the lamps on the top end of the telescope should now be on.# On the SpUpNIC Control GUI, make sure there are no mirrors in the light path (no blue border around the spectrograph schematic) and take some trial FLAT exposures to determine the exposure time required to reach ~40k counts. The lamps are quite red, so blue settings (e.g. G4) will need long exposures. It's fine to crank the slit wide open to let more light in (you do not care about resolution here).# Take e.g. 15 flats by populating the "# Exposures" box accordingly.# Once you're done, go back to the TCS and:## Turn off the flatfield lights ("Flat Lamp ON" button - turns yellow/OFF)## Switch the dome to auto (press "Man" - turns green/Auto)## Park the telescope (TARGET menu - click "Park" button)## Close the mirror covers (CLEAR --> DOME --> Mirror CLOSE)## If you're finishing here, switch the dome back to manual and turn off telescope power (click Telescope Power is ON --> red/OFF), or if you're opening to observe leave dome in auto and power on. <!-- - Behind the control room desk, dial the rheostat fully anti-clockwise to zero [[File:rheostat.jpg|80px]]
- Flip the switch in front of it to ''On''
- Dial the rheostat up to '''140 V - do not exceed that value as you will blow the lamps''' - this value has decreased from 220 V since new lamps were installed in July 2019 - The lamps on the top end of the telescope should now be on - Open the mirror cover> <!-- - With the telescope vertical, rotate the dome to 127 degrees, so that the white flat-field screen is just to the east of the south pier
- Set the telescope RA to HA = 0
- Slew the telescope in Dec to the south pole (-90 degrees), while keeping an eye on the spectrograph cables
- If you run into the limit, an alarm will sound and the telescope will stop moving
- To recover: turn the over-ride key next to the console while backing the telescope out towards the north in Dec
- With the telescope at HA ~ 0/12 & Dec ~ -86:30, the telescope should be quite well centred on the flat-field screen - In the control room, take some trial exposures to check the count level, aim for ~40k counts - The lamps are quite red, so blue settings (e.g. G4) struggle for counts - In that case, it is fine to crank the slit wide open to let more light in (you do not care about resolution here) - Take as many flats as you like (say, 11?) once you have established an appropriate exposure time
- When you have the flats, slew the telescope back to the zenith (again keeping an eye on the cables)
- Dial the rheostat down to zero
- Flip the switch to ''Off''
- Close the mirror cover
-->
====Focusing The Spectrograph - running a Hartmann sequence====
Before each night's observations, you should focus the spectrograph. This is done using a scripted Hartmann sequence run from the SpUpNIC Control GUI. The process moves a shutter halfway into the beam, takes an arc exposure; then blocks the other half of the beam and takes a second arc exposure. The arc lines are then cross-correlated to measure the shift between the two. The procedure is repeated at a range of camera focus positions until the line shifts are minimised, indicating best focus. This procedure may be performed manually, but it is typically run automatically, as follows:
* # Take an arc to check that the grating angle is correct appropriate for your desired wavelength range, and to get an idea of the required exposure time (aim for at about least ~1000 counts in the weaker lines): in the ''Exposure/CCD info'' pane on the ''Main View'' tab, select "Exposure type" = ARC from the drop-down menu, and enter e.g. 10 seconds in the "Exposure time" box.* # If satisfied with the arc obtained, locate the ''Hartmann focus sequence'' panel in the ''Instrument Setup'' pane on the ''Main View'' tab of the SpUpNIC Control GUI (if not, adapt adjust the exposure time and grating angle as required before proceeding).* # Select the ''Auto'' tab and enter the parameters for the Hartmann sequence: 3.6 7 for the ''initial focus position'', 0.05 for the ''focus increment'' and 9 for the number of ''steps'' - with the system still set up as it was for the test arc (lamp on, arc mirror in beam). A bug in the software causes the Hartmann routine to fail if the camera focus isn't first set to the "initial focus pos", so enter 3.7 in the Camera focus "REQUESTED" box above, then click "Go". Once the focus has changed, click ''Run''to start the Hartmann sequence. * # The slit width will automatically be set to 1.05" and the exposure type will switch to HARTMANN, then the GUI will grey out and not be available during the focus sequence (although you will see the ''Current Camera Focus'' field changing and the Hartmann shutters indicate ''Moving''.* # On completion of the sequence: in the SpUpNIC Quick-Look GUI, in the log box to the right of the spectrum display window, you will see a list of focus positions and their corresponding pixel shifts. Best focus corresponds to a shift of zero.* Enter # The camera focus should automatically be set to the best focus value, but if it isn't, enter the best focus into the ''Requested " Camera Focus'' box on the SpUpNIC Control GUI's ''Instrument Setup'' pane and click ''Go''.* The Hartmann sequence ends with the shutter out of the beam, but for some reason it sends the slit width be sure to zero! So select the desired slit width in the ''Instrument Setup'' pane and click ''Go''. Check that it goes to the required position, click ''Go'' again if it does not do it the first time.
* Select "Exposure type" = ARC and take an arc to confirm that the focus looks good.
* Click on the arc mirror in the schematic to switch off the arc lamp and move the arc mirror out of the beam.
===Target Catalogue File===
Target names and coordinates get propagated into the fits headers by loading a target catalogue file into the ''Target Info'' pane and then selecting the appropriate target. They can also be read by the TCS, so you don't have to type them in there to slew to your target.
* Open a terminal on the SpUpNIC PC and use your favourite text editor to produce a simple text file (e.g. Run007.txt) with the format shown below:
* Click on the ''Load Target Catalogue'' button, then navigate to, and select, your catalogue.
* Select In the appropriate target name from the drop-down list ''Target Name'' box, type any character/number that appears after in the catalogue file has been loadedname of your target, and all targets containing those characters will appear in a dropdown list so you can select the appropriate one.
* If you edit the catalogue file, you'll need to reload it into the GUI before the changes will appear in the drop-down list.
===Setting up the slit position on the TCS - using the SpUpNIC Control GUI===
The purpose of this step is to figure out where on the acquisition image you need to place your star, in order for it to land close to the ideal spot on the slit. Very bright stars can be seen reflected on the slit jaws, and can be placed on the slit directly, but this is not the case for fainter stars, which need the superior reflectivity of the guide mirror in order to be seen on the acquisition camera. This position should be approximately stable throughout your run, but it is worth checking every couple of days that you can fine-tune the red box on target location using the acquisition camera screen still corresponds to the appropriate position on the slit. This is much easier now that the instrument has a rear-of-slit camera!.
* # Move the guide mirror into the beam, either by setting the ''Acquisition'' state in the ''Lamp/Mirror Settings'' pane of the SpUpNIC control GUI (if it says Guide Mirror ''Science'', click ''Change''), or by clicking on the guide mirror in the instrument schematic. * # Acquire a bright star (e.g. ~4th mag from the Bright Stars chapter of the Sutherland Almanac, available in the warm room), roughly centre it in the acquisition camera field and continue exposing. * # Move the guide mirror out of the beam (i.e. centre the mirror so that light can go down the central hole). * # Move the rear-of-slit mirror into the beam (''Lamp/Mirror Settings'' pane, RoS mirror change from ''Out of beam'' to ''In beam''). * # Turn on the slit illumination (in the ''Instrument Setup'' pane, ''Change'' to turn on the lamp). Tune the exposure time/LUT sliders on the TCS until you can clearly see the slit running horizontally across the acquisition image, approximately halfway up. * # Using the hand paddle, move the telescope to place the star on the slit, approximately one quarter of the image width away from the right-hand edge. * # Turn off slit illumination. * # Click on the icon [[File:Potcamicon.jpg|40px]] for the rear of slit camera (on the left-hand side of Monitor 1). * # An image window for the rear-of-slit camera will pop up. This looks up at the slit from below, to enable you to check that your star is centred on the slit. Move the telescope such that the star falls on the centre of the slit image in both x and y. [[File:slit_view.png|thumbnail]]* # Move the rear-of-slit mirror out of the beam and take a test spectrum (e.g. 20 seconds) of the bright star (in the ''Exposure/CCD info'' pane, select ''Exposure type'' = SCIENCE from the drop-down menu, enter ''20'' in ''Exposure time'' and click ''Expose'').* # The resulting image will be displayed on the Quick-Look GUI, on Monitor 2. You are aiming for the spectrum to fall on approximately the central row of pixels within the image area (note that this is a roughly central band that only covers about half the vertical extent of the CCD). If the spectrum is too high or low, move the telescope slightly in RA (the RA- button moves the spectrum downwards in the image), iterate until the star is well positioned.* # Once you are happy with the position of the spectrum on the image, go back to the TCS and add a red marker over the position of the star on the slit (TCS ''Pointer'' pane: ''Markers'', ''Add a red marker'').* # Finally, move the guide mirror into the beam, and add a second red marker at the position of the star. This marker will be used to approximately position stars on the slit that are too faint to be seen reflected off the slit jaws.
* The red markers are lost if the TCS software gets restarted, so it is a good idea to note down their coordinates!
* Click on the "continuous" button for an ongoing series of 2 second exposures
* Open the slit wide, to about 4"
* Adjust the slider bars at bar to the bottom right of the image (both most of the way to adjust the left) to set scaling, or hold down the brightness and contrastmouse button while mousing over the image, as in ds9 * Use Using GUIDE speed, use the handRA & Dec arrow buttons on the bottom-right of the TCS GUI (or the hand paddle if in the dome) to position the star near the centre of the slit (in both X and Y)* Adjust the telescope focus with on the TCS (or the hand-paddle if in the dome) in steps of 3-5 units and assess how the star image changes* The star will move around due to the translation of the secondary mirror, so adjust it back into view with the hand-paddle if necessary* Astigmatism in the system extends the star image diagonally and the orientation indicates whether the focus value is too high or too low: Star extended from upper-left to lower-right: focus number value is too high Star extended from lower-left to upper-right: focus number value is too low
* Best focus is where the star is as round and sharp as possible
* Optimum focus varies with temperature, typical summer values are ~2200 while cold winter nights may be closer to 2270 units
* The star used to focus the telescope may be too bright, so aim for something fainter (e.g. a guide star that needs a ~1 sec exposure).
* Adjust the acquisition camera focus with the up/down buttons in the lower right corner of the TCS GUI to get the stars as sharp as possible.
* With the new autoguider (installed Oct 2023), a focus value of 5300 is a good starting point.
==User's Troubleshooting Guide==
Please be sure to inform the instrument technical team of any technical issues you encounter during your run, either by emailing lisa(at)saao.ac.zaphoning the standby technician for problems that need immediate attention, or by means of for issues that can be addressed during the day, submit a report to the SAAO's online fault forum at [[http://faultreports.saao.ac.za/index.php?board=5.0]online fault forum].
'''Re-starting the Quick-Look software'''
==Technical Notes==
 
== Change Log ==
*'''February 2024:''' The new fold mirror for the instrument selector is now installed so there are some changes tp the routine to do target acquisition and to set up the guider - refer to the wiki for the [https://topswiki.saao.ac.za/index.php/74%22_/_1.9m_-_%22Instrument_Selector%22 "Instrument Selector"].
*'''October 2023:''' The new autoguider that forms part of the instrument selector to accommodate both SpUpNIC and SHOC has been commissioned. There are slight changes to the operation of the autoguider, and observers now needs to connect to a new TCS PC (tcs74v4.suth) to use the telescope with SpUpNIC.
*'''27 September 2017:''' SpUpNIC back in service after fixing a bad connection within the pre-amp electronics. On 8 September the detector began producing only zeros and after extensive trouble-shooting, the detector package was removed from the instrument (on 13 September) and sent down to Cape Town for further investigation and subsequent repair. A total of 12 scheduled nights were lost to this extremely serious failure (although the two observers affected worked with SHOC instead).
*'''3 August 2017:''' Completed extensive testing of various gratings (particularly G7) in order to characterise the ghosting issues reported previously.
*'''29 July 2017:''' Moved the SpUpNIC utility panel to improve the routing of the cables and air hose for the pneumatics to reduce the pointing restrictions in the south east. New software limits will soon be implemented to take advantage of the increased clearance between the spectrograph and the north pier.
*'''10 April 2017:''' G7 replaced with an almost identical new one that does not have fingerprints or scratches! The blaze of the new one is at 5000A, rather than 4600A, since the latter is no longer available from the manufacturer. The 5000A blaze is also a better match for the peak response of this CCD.
* '''30 March 2017:''' New functionality added to the GUI for the rear-of-slit (Lodestar) camera to allow background subtraction. There is now also a slider bar to adjust the brightness of the display, this works best with background subtraction applied.
* '''20-25 January 2017:''' Engineering run during which the cryostat was re-aligned to the rest of the instrument in an attempt to remove what was thought to be coma in the images. Eventually concluded that the faint tails extending redward of arc lines are an optical ghost - a series of reflections thought to arise as light bounces between the CCD and the field-flattener lens that forms the cryostat window. There is no simple fix for this so the effect will just have to be quantified.
* '''21 December 2016:''' Initial documentation for Quick-Look GUI added: https://topswiki.saao.ac.za/index.php/Quick_Look_Tool
* '''6-13 December 2016:''' Another intensive week of software refinement! Highlights include the introduction of: the ability to send target coordinates from the SpUpNIC target catalogue file to the TCS (both for pointing and for downloading finder charts), a new exposure tab for automatically running sequences of exposures (e.g. arc-object-arc procedures), a more streamlined Hartmann routine, as well as the general tidying up of various minor software issues. Also the start of comprehensive documentation of the SpUpNIC Control and Quick-Look GUIs.
* '''9 November 2016:''' Installed a new grating lock that restores full software control of the grating mechanism, while maintaining stability of the grating angle. The user can now change gratings and optimise the wavelength range by changing the grating angle via the SpUpNIC Control GUI (without having to call for technical support).
* '''5 August 2016:''' The cryostat lost vacuum and warmed up. We're not sure what caused this, but suspect that the cryostat valve had not been closed tightly enough and so the vacuum gradually degraded. Leak-testing revealed nothing so we pumped the cryostat over night and the observers were back on-sky a night later.
* '''30 July 2016:''' A new version of the Quick-Look GUI has been installed and seems to be working reliably, please report any issues to Lisa Crause (lisa_at_saao.ac.za).
* '''28 July 2016:''' The SpUpNIC optics fogged up due to a massive condensation event in the 1.9-m dome. A temporary dry nitrogen purge was introduced into the instrument to drive out the moisture - fortunately no real harm was done.
* '''1 June 2016:''' Disabled the input field and ''Go'' button for changing the grating angle in the instrument control GUI (to accompany the hardware changes described below). Please contact the standby electronics technician if you wish to change either the grating angle or the grating.
* '''26 May 2016:''' A mechanical brake was installed on the grating mechanism to eliminate play in the system (this will be replaced with an electro-mechanical solution to be developed over the coming months).
* '''25 May 2016:''' The inner surfaces of the instrument covers were coated with resin to stop the generation of fine fibre-glass dust.
* '''5 May 2016:''' The optics in the lower box were cleaned to get rid of the fine dust that was being liberated by the instrument covers.
* '''16-23 December 2015:''' The SpUpNIC software evolved substantially during this week. The wiki has been adapted to reflect these and other subsequent changes.
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